One thing for sure..stock FA 2.4.x does not support Tax on Bank Payments, deposits..etc..
The question is why not, since in RSA the banks charge VAT on all their baning transaction fees and account fees. There is no other way that these VAT can be incorporated into the TAX Report since it is only displayed on your bank statement. No separate VAT invoice is issued by the bank.
I can understand that it is not all banking transactions, but when you create a quick entry with VAT inclusive for bank cost and account fees, all of that is automated. Just enter the amount.
Any other transaction that happens once-off, who is not a customer or supplier will be handled the same way, although you have an invoice as proof.